The KrakatoaHome directory is set as the directory the MaxKrakatoa.dlr is loaded from, and the KrakatoaStartup.ms should be located in this same directory. Krakatoa expects all the supporting script files (including KrakatoaPartitionTasksOnDeadline.ms) in KrakatoaHome/…/…/Scripts/. As long as you maintain that structure, everything will be golden.
Does that help? Would you prefer something more flexible?
Come to think of it, FranticParticles.KrakatoaHome may have already added the …/…/ to the path of the .dlr, So KrakatoaHome/Scripts might be the correct location. I will double check tomorrow when I’m in the office.